AlgaTerra Information System on Micro Algae - Molecular Data and Phylogeny

Molecular Phylogeny of Micro Algae in the AlgaTerra Database

AlgaTerra Information System on terrestrial and limnic Micro Algae

DNA Data in AlgaTerra

	Cocconeis placentula Ehrenb.
	Infusionsthierchen, p. 194. 1838.
	[D36_012] sec. Zimmermann, J., Jahn, R. & Gemeinholzer, B. - Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols 2011.

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	Culture Strain No: D36_012
	Locus: FR873236, 377 bp, DNA linear, PLN 09-AUG-2011
	Definition: Cocconeis placentula partial 18S rRNA gene, specimen voucher B 40 0040647, strain D36_012.
	Accession: FR873236
	Version: FR873236.1 GI:343178525
	Keywords: 18S rRNA
	Source: Cocconeis placentula
	Organism: Cocconeis placentula; Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Achnanthales; Cocconeidaceae; Cocconeis.
Reference:
	(bases 1 to 377) Zimmermann, J. (Direct Submission): Submitted (07-JUN-2011) to the INSDC. Botanic Garden and Botanical Museum Berlin-Dahlem, Freie Universitaet Berlin, Koenigin-Luise-Str. 6-8, 14195 Berlin, GERMANY
Features:
	Location/Qualifiers // Source 1..377 / organism="Cocconeis placentula" / mol_type="genomic DNA" / strain="D36_0121" / specimen_voucher="B40 0040647" / db_xref="taxon:431341" / country="Germany" / gene <1..>377 / gene="18S rRNA" / rRNA <1..>377 / gene="18S rRNA" / product="18S ribosomal RNA"
	Sequence Length: 377
	Base Count:

Origin:
	001 attccagctc caatagcgta tattaaagtt gttgcagtta aaaagctcgt agttggattt 61 gtggatgctc acttggtcct cttgaggcgc cagtgtgggg atccatcctt gggtggatgc 121 tgtgtggcat tcggttgtcg cgcaggtgat gcccatcgtt tactgtgaaa aaatcagcgc 181 gttcaaagca ggcttatgcc gttgaatgta ttagcatgga ataatgagat aggacctcgg 241 tactattttg ttggtttgcg cactggggta atgattaata gggacagttg ggggtattcg 301 tattgcattg tcagaggtga aattcttgga tttctgcaag acgaactact gcgaaagcat 361 ttaccaagga tgttttc


Plain Sequence:
ATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGATGCTCACTTGGTCCTCTTGAGGCGCCAGTGTGGGGATCCATCCTTGGGTGGATGCTGTGTGGCATTCGGTTGTCGCGCAGGTGATGCCCATCGTTTACTGTGAAAAAATCAGCGCGTTCAAAGCAGGCTTATGCCGTTGAATGTATTAGCATGGAATAATGAGATAGGACCTCGGTACTATTTTGTTGGTTTGCGCACTGGGGTAATGATTAATAGGGACAGTTGGGGGTATTCGTATTGCATTGTCAGAGGTGAAATTCTTGGATTTCTGCAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTC
	Proposed Barcode
	Zimmermann, J., Jahn, R. & Gemeinholzer, B. 2011: Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols. - Org. Divers. Evol. 11(3): 173-192.
	http://www.ncbi.nlm.nih.gov/nuccore/FR873236

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